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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10944728_10945039_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10944728 - 10945039
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGTGG
5'SS Class:
major
3'SS Sequence:
GCTCTTACCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
CTGCTCTTACCT
Flanking Amino Acid:
DVSKADITLPVFTLKERCLQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.6
43.9
Major BPS
69.2
0.48
1
61
37.1
Major PPT
73
0.52
0.9
70
35.2
Minor 5ss
29.6
-2.3
3.3
37.8
47
Minor BPS
58.2
0.33
1.7
72.43
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003676
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003751
10944543 - 10948314
3772