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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10949531_10949812_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10949531 - 10949812
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
LTQDKKCFAKALSRMGHIWR
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.8
0.74
0.8
78.4
34.8
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
THUMPD3
Ensembl Gene ID:
ENSAPLG00000003598
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025153
10948492 - 10954390
5899
ENSAPLT00000023355
10948492 - 10954390
5899
ENSAPLT00000003684
10948492 - 10953974
5483