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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10949937_10950183_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10949937 - 10950183
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGCAATC
Flanking Amino Acid:
VIVTDMPFGKRIGSKKKNWD
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.2
0.66
0.9
72.6
36
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
48.4
-0.1
2.4
71.85
39.5

Associated Gene:

Gene:
THUMPD3
Ensembl Gene ID:
ENSAPLG00000003598
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025153
10948492 - 10954390
5899
ENSAPLT00000023355
10948492 - 10954390
5899
ENSAPLT00000003684
10948492 - 10953974
5483