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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10950295_10950465_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10950295 - 10950465
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TGTCTTTGCACT
Flanking Amino Acid:
SLLKKNENKESSTSLGIPLD
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
81
0.7
0.9
74.3
35.4
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
48.2
-0
1.9
70.54
40.4

Associated Gene:

Gene:
THUMPD3
Ensembl Gene ID:
ENSAPLG00000003598
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025153
10948492 - 10954390
5899
ENSAPLT00000023355
10948492 - 10954390
5899
ENSAPLT00000003684
10948492 - 10953974
5483