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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10951031_10951441_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10951031 - 10951441
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
CTTCTCTCAAAG
Flanking Amino Acid:
LRSTLAYGMLRLCDPQPTDI
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.2
81.5
32.7
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
79.9
0.67
0.8
76.7
32
Minor 5ss
31.7
-2.1
3.1
40.9
45.4
Minor BPS
50
-0.1
1.8
58.13
43.2

Associated Gene:

Gene:
THUMPD3
Ensembl Gene ID:
ENSAPLG00000003598
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025153
10948492 - 10954390
5899
ENSAPLT00000023355
10948492 - 10954390
5899
ENSAPLT00000003684
10948492 - 10953974
5483