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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10951573_10953592_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10951573 - 10953592
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTCC
5'SS Class:
major
3'SS Sequence:
AGTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TACTCCTGATAT
Flanking Amino Acid:
FRDYQFKETKVLLNIHNNEV
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62.8
38.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.2
0.68
0.8
78.4
35.5
Minor 5ss
38.3
-1.3
3.2
50.4
46.4
Minor BPS
52.5
0.16
1.9
71.67
44.5

Associated Gene:

Gene:
THUMPD3
Ensembl Gene ID:
ENSAPLG00000003598
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025153
10948492 - 10954390
5899