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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10974685_10982122_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10974685 - 10982122
Intron Length:
7438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
AGAGTCTCAACC
Flanking Amino Acid:
SEDVIRLFKKSKEIGLQMHE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
50.9
0.01
1.6
58.51
40

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020206
10974522 - 11021540
47019
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755
ENSAPLT00000042286
10974522 - 11021540
47019
ENSAPLT00000022684
10969084 - 11016432
47349