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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10998260_10998490_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10998260 - 10998490
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAA
U12 Branch Point Sequence:
GCTTCAAGAACA
Flanking Amino Acid:
LATLKIENEEVRKTLDATMQ
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
60.4
0.26
1.3
65.6
41.4
Major PPT
65.2
0.34
1
61.2
40.3
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
48.1
-0.1
2
63.78
41.6

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042286
10974522 - 11021540
47019
ENSAPLT00000022684
10969084 - 11016432
47349
ENSAPLT00000020206
10974522 - 11021540
47019
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755