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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10999753_11001165_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10999753 - 11001165
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTGATGGAAACT
Flanking Amino Acid:
HDLLKQTLGEGERAECGTTR
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
39.4
-0.7
2.7
63.33
47.1

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022684
10969084 - 11016432
47349
ENSAPLT00000020206
10974522 - 11021540
47019
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755
ENSAPLT00000042286
10974522 - 11021540
47019