About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11001194_11004651_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11001194 - 11004651
Intron Length:
3458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
GTTTTGTTGATT
Flanking Amino Acid:
EGERAECGTTRPPCLPPKPQ
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
81
0.7
0.8
73.1
36.9
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
57.5
0.32
2.1
78.89
37.8

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755
ENSAPLT00000022684
10969084 - 11016432
47349
ENSAPLT00000020206
10974522 - 11021540
47019