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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11001194_11006214_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11001194 - 11006214
Intron Length:
5021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CTTTTCTTCCCG
Flanking Amino Acid:
EGERAECGTTRGRRNARTRN
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
82.6
0.73
0.9
80.5
37
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
41.8
-0.7
3.6
61.99
46.3

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042286
10974522 - 11021540
47019