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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11004755_11006933_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11004755 - 11006933
Intron Length:
2179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCGCT
5'SS Class:
major
3'SS Sequence:
CTCTTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTAATT
Flanking Amino Acid:
FNGNMETFIKDSGQAIPLVV
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
62.7
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74
0.54
1
75.3
27.3
Minor 5ss
38
-1.4
3.6
57.3
46.9
Minor BPS
75.3
0.87
1
82.84
32

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022684
10969084 - 11016432
47349
ENSAPLT00000020206
10974522 - 11021540
47019
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755