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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11006246_11006933_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11006246 - 11006933
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
CTCTTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTAATT
Flanking Amino Acid:
GRRNARTRNQDSGQAIPLVV
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74
0.54
1
75.3
27.3
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
75.3
0.87
1
82.84
32

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042286
10974522 - 11021540
47019