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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11007497_11008712_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11007497 - 11008712
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TATAACTGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTATAACT
Flanking Amino Acid:
VNDIKNSFERGEDPLADDQN
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
59.3
0.21
1.2
54.6
45
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
68.3
0.65
1.5
85.33
34.5

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020206
10974522 - 11021540
47019
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755
ENSAPLT00000042286
10974522 - 11021540
47019
ENSAPLT00000022684
10969084 - 11016432
47349