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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11012302_11012558_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11012302 - 11012558
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
ACTTCCCTAACA
Flanking Amino Acid:
VMRYLFAFLNHLSQYSDENM
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
35.5
-1.6
3.1
50.3
40.1
Minor BPS
71
0.65
1.7
78.72
37.5

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022684
10969084 - 11016432
47349
ENSAPLT00000020206
10974522 - 11021540
47019
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755
ENSAPLT00000042286
10974522 - 11021540
47019