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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11012787_11013460_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11012787 - 11013460
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCCTTTAAAG
Flanking Amino Acid:
EKCMTGGEEYCDSPHSEPGT
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
70.8
0.52
1.4
74.3
37.5

Associated Gene:

Gene:
SRGAP3
Ensembl Gene ID:
ENSAPLG00000003289
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020206
10974522 - 11021540
47019
ENSAPLT00000003426
10970187 - 11019674
49488
ENSAPLT00000045304
10974522 - 11019276
44755
ENSAPLT00000042286
10974522 - 11021540
47019
ENSAPLT00000022684
10969084 - 11016432
47349