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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11041640_11043087_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11041640 - 11043087
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GCCTGTTTAAAA
Flanking Amino Acid:
AMIIPQCSHNYCSLCIRKFL
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.7
42
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
39
-1.2
2.7
53.9
42.7
Minor BPS
49.1
-0
1.9
56.56
43

Associated Gene:

Gene:
RAD18
Ensembl Gene ID:
ENSAPLG00000003138
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003199
11041371 - 11083565
42195