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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11043150_11044584_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11043150 - 11044584
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
YKTQCPTCCVAVSESDLKNN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.8
0.76
0.8
81.8
28.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
RAD18
Ensembl Gene ID:
ENSAPLG00000003138
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003199
11041371 - 11083565
42195