About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11044656_11052157_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11044656 - 11052157
Intron Length:
7502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTGT
5'SS Class:
major
3'SS Sequence:
TGGATACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
ATGTAGCTAACT
Flanking Amino Acid:
DELVKSFNSARQQLVQLVLD
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
41.4
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
65.7
0.35
1
55.8
44.7
Minor 5ss
44.6
-0.6
3.1
65.1
46.2
Minor BPS
46.7
-0.1
2.4
72.23
44.2

Associated Gene:

Gene:
RAD18
Ensembl Gene ID:
ENSAPLG00000003138
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003199
11041371 - 11083565
42195