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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11055742_11057680_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11055742 - 11057680
Intron Length:
1939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATGATCT
Flanking Amino Acid:
AQCDSLNPKSVAEIAKELEK
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.3
0.55
1
70.8
39
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
49.4
0.04
2.1
79.66
41.5

Associated Gene:

Gene:
RAD18
Ensembl Gene ID:
ENSAPLG00000003138
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003199
11041371 - 11083565
42195