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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11064362_11067618_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11064362 - 11067618
Intron Length:
3257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
CAATCTCTACTT
Flanking Amino Acid:
QIVKELAAGTEEDLKEHNST
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
82.3
0.73
0.9
81.4
30.6
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
46.8
-0.1
1.9
62.2
42.3

Associated Gene:

Gene:
RAD18
Ensembl Gene ID:
ENSAPLG00000003138
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003199
11041371 - 11083565
42195