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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11067779_11075398_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11067779 - 11075398
Intron Length:
7620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGCTGCTAAAAT
Flanking Amino Acid:
AFSQSSGSTSSSSSDILRDL
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
28.4
-2.5
2.9
32.1
42.4
Minor BPS
48.6
-0
2.2
69.63
46.9

Associated Gene:

Gene:
RAD18
Ensembl Gene ID:
ENSAPLG00000003138
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003199
11041371 - 11083565
42195