Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11148574_11149833_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11148574 - 11149833

Intron Length:

1260

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCTCGTTGC

5'SS Class:

major

3'SS Sequence:

CTGACGGAGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

CCCCCGCTGACG

Flanking Amino Acid:

LLFSSRVPVPAARTALLRFV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.33

1.3

56.2

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

49.4

-0

1.2

42.6

42.3

Minor 5ss

25.7

-2.8

3.7

32.9

36.7

Minor BPS

39.6

-0.9

2.3

40.33

Associated Gene:

Gene:

SSUH2

Ensembl Gene ID:

ENSAPLG00000003015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003055

11148390 - 11155825

7436