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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11149941_11150759_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11149941 - 11150759
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCGTGAT
U12 Branch Point Sequence:
TCTGCGTGATTT
Flanking Amino Acid:
QELRPRVTYRYRLETFSESR
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
68.4
38.2
Major BPS
50.9
0.02
1.4
45
47.8
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
26.7
-2.7
2.9
23.7
36.8
Minor BPS
43.2
-0.4
2.3
63.99
46.8

Associated Gene:

Gene:
SSUH2
Ensembl Gene ID:
ENSAPLG00000003015
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003055
11148390 - 11155825
7436