Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11154832_11155516_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11154832 - 11155516

Intron Length:

685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTTAT

U12 Branch Point Sequence:

TTGGGTTTATTT

Flanking Amino Acid:

ENIFQDENVVVCPIVDFPEP

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

36.6

Major BPS

63.5

0.34

1.4

57.4

49.1

Major PPT

86.5

0.82

0.7

81.8

29.9

Minor 5ss

-2.2

3.2

41.8

Minor BPS

47.1

-0.1

2.1

66.59

45.3

Associated Gene:

Gene:

SSUH2

Ensembl Gene ID:

ENSAPLG00000003015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003055

11148390 - 11155825

7436