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Intron Name: Anas_platyrhynchos_platyrhynchos_13_11177761_11183384_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11177761 - 11183384

Intron Length:

5624

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGCCAT

U12 Branch Point Sequence:

GGAGCGTCACAC

Flanking Amino Acid:

LEGAPAAELYHCEACKEAMP

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

80.9

31.3

Major BPS

53.4

0.08

1.4

64.2

Major PPT

85.4

0.8

0.7

80.1

25.2

Minor 5ss

37.8

-1.4

3.3

55.2

42.1

Minor BPS

34.2

-1.2

2.2

38.32

39.3

Associated Gene:

Gene:

LMCD1

Ensembl Gene ID:

ENSAPLG00000002970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032837

11177167 - 11190434

13268

ENSAPLT00000032082

11177167 - 11202945

25779

ENSAPLT00000022195

11177167 - 11194819

17653

ENSAPLT00000003015

11177167 - 11189361

12195