About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11187896_11188634_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11187896 - 11188634
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCGCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
GTCGTATCAAAA
Flanking Amino Acid:
SCTGFEPHSWRKICKSCKCS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
75.3
0.57
0.9
69.4
36.8
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
42.6
-0.5
1.9
50.39
40.5

Associated Gene:

Gene:
LMCD1
Ensembl Gene ID:
ENSAPLG00000002970
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032082
11177167 - 11202945
25779
ENSAPLT00000022195
11177167 - 11194819
17653
ENSAPLT00000003015
11177167 - 11189361
12195
ENSAPLT00000032837
11177167 - 11190434
13268