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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11188724_11189331_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11188724 - 11189331
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
ACCTTTCCAACT
Flanking Amino Acid:
MRGCVTPQIHMSVGQQQSGR
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
32.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
84.3
0.77
0.8
76.4
37.7
Minor 5ss
30.9
-2.2
3.2
40.5
38.7
Minor BPS
46.8
-0.1
1.8
62.33
42.2

Associated Gene:

Gene:
LMCD1
Ensembl Gene ID:
ENSAPLG00000002970
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003015
11177167 - 11189361
12195