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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11188724_11189978_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11188724 - 11189978
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGTGCAA
5'SS Class:
weak_major
3'SS Sequence:
TGCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
ACCTTTCCAACT
Flanking Amino Acid:
MGANKMGRMSVGQQQSGR
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.2
49.5
42.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
84.3
0.77
0.8
76.4
37.7
Minor 5ss
28.3
-2.5
3.4
29.1
43.5
Minor BPS
46.8
-0.1
1.8
62.33
42.2

Associated Gene:

Gene:
LMCD1
Ensembl Gene ID:
ENSAPLG00000002970
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032837
11177167 - 11190434
13268