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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11212567_11213659_F

Intron Information:

Intron Rank:
132140
Intron Class:
major
Intron Phase:
Intron Coordinates:
11212567 - 11213659
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.5
0.8
0.8
82.4
34
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
81.9
1.08
1
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021011
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024549
11212492 - 11215301
2810