Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11213774_11214665_F

Intron Information:

Intron Rank:

132141

Intron Class:

major

Intron Phase:

Intron Coordinates:

11213774 - 11214665

Intron Length:

892

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGCCAT

5'SS Class:

major

3'SS Sequence:

TTCTGTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCAAAT

U12 Branch Point Sequence:

GCATCCTCCATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

63.2

42.6

Major BPS

64.7

0.37

1.1

69.5

34.1

Major PPT

86.9

0.83

0.7

84.6

30.4

Minor 5ss

45.8

-0.4

2.9

61.4

44.5

Minor BPS

47.7

-0.1

56.1

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021011

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033924

11213518 - 11215301

1784

ENSAPLT00000024549

11212492 - 11215301

2810