Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11295690_11322255_F

Intron Information:

Intron Rank:

127685

Intron Class:

major

Intron Phase:

Intron Coordinates:

11295690 - 11322255

Intron Length:

26566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGATTGT

5'SS Class:

major

3'SS Sequence:

TCTGTTTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTGTTTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

72.1

40.4

Major BPS

100

1.24

0.5

100

Major PPT

85.1

0.79

0.8

83.9

31.1

Minor 5ss

39.9

-1.1

3.3

58.3

46.4

Minor BPS

64.1

0.52

87.23

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018845

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038687

11295532 - 11330105

34574