About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11331524_11332060_F

Intron Information:

Intron Rank:
144302
Intron Class:
major
Intron Phase:
Intron Coordinates:
11331524 - 11332060
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GTATCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTCTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.7
0.51
1
66
40.6
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
54.6
0.22
2.2
80.3
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027804
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021454
11331136 - 11333321
2186