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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11331524_11333241_F

Intron Information:

Intron Rank:
144305
Intron Class:
major
Intron Phase:
Intron Coordinates:
11331524 - 11333241
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTGTTCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
47.8
-0.3
1.8
54.49
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027804
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022570
11322774 - 11333469
10696