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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11378770_11379258_F

Intron Information:

Intron Rank:
137043
Intron Class:
major
Intron Phase:
Intron Coordinates:
11378770 - 11379258
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
CTTCATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AATTCTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
80.7
33.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81
0.7
0.8
75.4
32.7
Minor 5ss
36.5
-1.5
3.2
50.6
40.3
Minor BPS
53.3
0.18
1.8
71.75
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023795
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018009
11378002 - 11379281
1280