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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11401935_11431584_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11401935 - 11431584
Intron Length:
29650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
GCTTTGGTGACT
Flanking Amino Acid:
TELCENVDPNSPAAKKKYVS
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
84.3
0.77
0.8
81.2
36.5
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
44.3
-0.3
2.6
66.69
44.6

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032413
11401885 - 11665175
263291
ENSAPLT00000017921
11401885 - 11665175
263291