Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11401935_11461206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11401935 - 11461206

Intron Length:

59272

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GGTTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTGAC

U12 Branch Point Sequence:

GCTTTGGTGACT

Flanking Amino Acid:

FFGTAQSAEKALLQKRSTSV

Intron Amino Acid Position:

834

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.6

32.8

Major BPS

56.2

0.15

1.3

48.8

46.3

Major PPT

84.3

0.77

0.8

81.2

36.5

Minor 5ss

30.6

-2.2

3.4

39.4

46.5

Minor BPS

44.3

-0.3

2.6

66.69

44.6

Associated Gene:

Gene:

GRM7

Ensembl Gene ID:

ENSAPLG00000002555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034582

11401530 - 11665175

263646