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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11426672_11431584_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11426672 - 11431584
Intron Length:
4913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
ACTTTTCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATGTATTTACTT
Flanking Amino Acid:
TELCENVDPNNCIPPVRKSV
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
79.3
0.66
0.8
74.4
30
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
52.7
0.16
1.8
70.69
41

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032539
11426579 - 11665175
238597