About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11431832_11461206_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11431832 - 11461206
Intron Length:
29375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTATTTGTAATA
Flanking Amino Acid:
FFGTAQSAEKLYIQTTTLTI
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76.5
0.6
0.8
69.4
36.9
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
56.6
0.2
2
71.01
35.8

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032413
11401885 - 11665175
263291
ENSAPLT00000017921
11401885 - 11665175
263291
ENSAPLT00000002592
11430661 - 11665175
234515
ENSAPLT00000032539
11426579 - 11665175
238597