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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11442528_11461206_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11442528 - 11461206
Intron Length:
18679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CGTGTGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCTCCATACGT
Flanking Amino Acid:
FFGTAQSAEKVGDQESLSLQ
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
67.5
0.39
1.1
61.3
43.6
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
50.3
0.09
2.2
76.47
46

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037672
11442225 - 11665175
222951