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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11462143_11479258_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11462143 - 11479258
Intron Length:
17116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
AAATGTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTATTTCAAAT
Flanking Amino Acid:
GQWTDDLQLNIDEMQWGKGV
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
71.4
40.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
62
0.27
1
54.7
40.4
Minor 5ss
32.8
-2
2.9
42
37.6
Minor BPS
51.1
0.11
1.7
69.6
41.4

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032413
11401885 - 11665175
263291
ENSAPLT00000017921
11401885 - 11665175
263291
ENSAPLT00000037672
11442225 - 11665175
222951
ENSAPLT00000002592
11430661 - 11665175
234515
ENSAPLT00000034582
11401530 - 11665175
263646
ENSAPLT00000032539
11426579 - 11665175
238597