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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11479399_11485071_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11479399 - 11485071
Intron Length:
5673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGGAT
U12 Branch Point Sequence:
TTTGGTTGGATT
Flanking Amino Acid:
LKYIRSVNFNGSAGTPVMFN
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.3
40.8
Major BPS
53.7
0.09
1.6
57.1
49.4
Major PPT
80.4
0.68
0.7
73.1
31.8
Minor 5ss
38.3
-1.3
3
47.2
48.2
Minor BPS
47.3
-0.1
2
70.82
41.1

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002592
11430661 - 11665175
234515
ENSAPLT00000037672
11442225 - 11665175
222951
ENSAPLT00000034582
11401530 - 11665175
263646
ENSAPLT00000032539
11426579 - 11665175
238597
ENSAPLT00000032413
11401885 - 11665175
263291