About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11479399_11497596_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11479399 - 11497596
Intron Length:
18198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGGAT
U12 Branch Point Sequence:
TTTGGTTGGATT
Flanking Amino Acid:
KKEDTDRKCTGSAGTPVMFN
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.3
40.1
Major BPS
53.7
0.09
1.6
57.1
49.4
Major PPT
80.4
0.68
0.7
73.1
31.8
Minor 5ss
46.1
-0.4
2.5
59.5
45
Minor BPS
47.3
-0.1
2
70.82
41.1

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017921
11401885 - 11665175
263291