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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11497738_11521815_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11497738 - 11521815
Intron Length:
24078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
CTAGCTTGAGGT
Flanking Amino Acid:
TILPKRATIEGFDAYFTSRT
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
84.6
0.78
0.7
76.7
31.9
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
42.6
-0.4
2
56.99
45.8

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032413
11401885 - 11665175
263291
ENSAPLT00000017921
11401885 - 11665175
263291
ENSAPLT00000037672
11442225 - 11665175
222951
ENSAPLT00000002592
11430661 - 11665175
234515
ENSAPLT00000034582
11401530 - 11665175
263646
ENSAPLT00000032539
11426579 - 11665175
238597