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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11521971_11522790_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11521971 - 11522790
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTAAATTAACT
Flanking Amino Acid:
IVIFANDEDIKQILAAAKRA
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
76.2
39.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.3
0.84
0.6
83.5
24.9
Minor 5ss
37.6
-1.4
3.3
49
41.4
Minor BPS
61.6
0.44
1.8
82.15
38.2

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032413
11401885 - 11665175
263291
ENSAPLT00000017921
11401885 - 11665175
263291
ENSAPLT00000037672
11442225 - 11665175
222951
ENSAPLT00000002592
11430661 - 11665175
234515
ENSAPLT00000034582
11401530 - 11665175
263646
ENSAPLT00000032539
11426579 - 11665175
238597