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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11522933_11577399_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11522933 - 11577399
Intron Length:
54467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
CTTTCTTCAACA
Flanking Amino Acid:
ESFMQISREAGGLCIAQSLK
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
80.8
0.69
0.8
77.3
30
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
71.7
0.68
1.5
79.34
37.2

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032413
11401885 - 11665175
263291
ENSAPLT00000017921
11401885 - 11665175
263291
ENSAPLT00000037672
11442225 - 11665175
222951
ENSAPLT00000002592
11430661 - 11665175
234515
ENSAPLT00000034582
11401530 - 11665175
263646
ENSAPLT00000032539
11426579 - 11665175
238597