Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1156824_1173950_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1156824 - 1173950

Intron Length:

17127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGCCCT

5'SS Class:

major

3'SS Sequence:

TTTTTATTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTGCCATTAATT

Flanking Amino Acid:

TGSIACDDCFKSFVIQQIPS

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

69.1

41.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

93.4

0.98

0.7

89.1

26.3

Minor 5ss

42.2

-0.9

3.1

58.4

39.9

Minor BPS

68.3

0.65

1.6

82.85

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025956

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043972

1155784 - 1183028

27245