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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11577617_11664546_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11577617 - 11664546
Intron Length:
86930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCAGAAAT
Flanking Amino Acid:
MVANILRLFQIPQISYASTA
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
49.8
0.06
1.9
76.13
39.6

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032413
11401885 - 11665175
263291
ENSAPLT00000017921
11401885 - 11665175
263291
ENSAPLT00000037672
11442225 - 11665175
222951
ENSAPLT00000002592
11430661 - 11665175
234515
ENSAPLT00000034582
11401530 - 11665175
263646
ENSAPLT00000032539
11426579 - 11665175
238597