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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11588_11981_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11588 - 11981
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
CTTTAATGTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATG
Flanking Amino Acid:
IYAPEDHVIKLTYKSFEVEE
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
63.7
0.31
1.2
63.6
40.9
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
83.7
0.92
1.1
82.98
31.5

Associated Gene:

Gene:
OVCH2
Ensembl Gene ID:
ENSAPLG00000004207
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004323
10484 - 20591
10108