About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11653492_11664546_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11653492 - 11664546
Intron Length:
11055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
TGTCTCTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTGTCTCTATTC
Flanking Amino Acid:
MVANILRLFQDRQALNEKEP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
79.8
0.67
0.9
77.7
35.7
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
50.7
0
1.9
66.47
39.9

Associated Gene:

Gene:
GRM7
Ensembl Gene ID:
ENSAPLG00000002555
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047671
11653366 - 11665175
11810